PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676702456
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 462aa    MW: 51851.4 Da    PI: 6.3378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676702456genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34171072101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+++++++sws+++nsf+v+++ ef++ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF ++ F k++k+ll++i+
     676702456  17 FLVKTYEMVDDSSTDQIVSWSSTNNSFIVWNQAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFLNDDFIKDQKHLLKNIH 104
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
     676702456 105 RRK 107
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.2E-6113106IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3513106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
TSASVNGGEG AGGPAPFLVK TYEMVDDSST DQIVSWSSTN NSFIVWNQAE FSRLLLPTYF  60
KHNNFSSFIR QLNTYGFRKI DPERWEFLND DFIKDQKHLL KNIHRRKPIH SHSQPPVSSV  120
DQERAALQEQ MDNLSREKAA IEAKLIKFKQ QKSTAKHNLD EMTEHVDDME KRQKSLLSFL  180
ETAIRNPTFI KNFGRKIEQL DVSAYNKKRR LPQVEQSKPP SEDSHLDNSS GSSRPESGNI  240
FHQNFSSKLR LELSPAVSDM NMVSHSIQSS NEEGASPKGI LSGSEPKTTQ TRREGLPFAP  300
EPLELADTGS CPGILLLNDN TRAESLQQKI TSSEETDGFS CHLNLTLASA PLPDKTASQI  360
AKTTHKSQET GRSTELNFNS IETSEKNRGE QDVVVGGKQA NAAPPARVND LFWEQFLTER  420
PGASDNEEAS STYRANPYEE QEEKRNGHTM SRNTKNIEQL TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-24810617129Heat shock factor protein 1
5d5v_B1e-24810617129Heat shock factor protein 1
5d5v_D1e-24810617129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637593.10.0PREDICTED: heat stress transcription factor A-5
RefseqXP_013637590.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ50.0HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A0D3BYU10.0A0A0D3BYU1_BRAOL; Uncharacterized protein
STRINGBra032752.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101342433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.10.0HSF family protein